IL_8K82_259
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGCAUG*UGAUG
- Length
- 11 nucleotides
- Bulged bases
- 8K82|1|C2|C|1274, 8K82|1|C2|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K82_259 not in the Motif Atlas
- Geometric match to IL_6CZR_365
- Geometric discrepancy: 0.2015
- The information below is about IL_6CZR_365
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_45699.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8K82|1|C2|U|1272
8K82|1|C2|G|1273
8K82|1|C2|C|1274
8K82|1|C2|A|1275
8K82|1|C2|U|1276
8K82|1|C2|G|1277
*
8K82|1|C2|U|1434
8K82|1|C2|G|1435
8K82|1|C2|A|1436
8K82|1|C2|U|1437
8K82|1|C2|G|1438
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SD
- Small ribosomal subunit protein uS3
- Chain SK
- Small ribosomal subunit protein eS10A
- Chain SU
- Small ribosomal subunit protein uS10
- Chain Sd
- Small ribosomal subunit protein uS14A
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