IL_8K82_261

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UG*UGA

Length

5 nucleotides

Bulged bases

8K82|1|C2|G|1435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K82_261 not in the Motif Atlas

Geometric match to IL_8ZA0_002

Geometric discrepancy: 0.3928

The information below is about IL_8ZA0_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

8K82|1|C2|U|1276
8K82|1|C2|G|1277
*
8K82|1|C2|U|1434
8K82|1|C2|G|1435
8K82|1|C2|A|1436

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SD

Small ribosomal subunit protein uS3

Chain SK

Small ribosomal subunit protein eS10A

Chain SU

Small ribosomal subunit protein uS10

Chain Sd

Small ribosomal subunit protein uS14A