IL_8KAJ_005
3D structure
- PDB id
- 8KAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of SpyCas9-crRNA-tracrRNA complex bound to 16nt target DNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.42 Å
Loop
- Sequence
- GAAU*ATTC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8KAJ|1|A|G|6
8KAJ|1|A|A|7
8KAJ|1|A|A|8
8KAJ|1|A|U|9
*
8KAJ|1|C|DA|20
8KAJ|1|C|DT|21
8KAJ|1|C|DT|22
8KAJ|1|C|DC|23
Current chains
- Chain A
- RNA (34-MER)
- Chain C
- DNA (5'-D(*CP*AP*AP*TP*AP*CP*CP*TP*TP*TP*TP*AP*TP*CP*CP*AP*TP*AP*AP*AP*TP*TP*CP*G)-3')
Nearby chains
- Chain B
- CRISPR-associated endonuclease Cas9/Csn1
Coloring options: