IL_8KAJ_011

3D structure

PDB id

8KAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of SpyCas9-crRNA-tracrRNA complex bound to 16nt target DNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

AGAG*CAAGUU

Length

10 nucleotides

Bulged bases

8KAJ|1|E|A|28, 8KAJ|1|J|U|44

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8KAJ_011 not in the Motif Atlas

Geometric match to IL_4ZT0_003

Geometric discrepancy: 0.214

The information below is about IL_4ZT0_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82683.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

8KAJ|1|E|A|26
8KAJ|1|E|G|27
8KAJ|1|E|A|28
8KAJ|1|E|G|29
*
8KAJ|1|J|C|40
8KAJ|1|J|A|41
8KAJ|1|J|A|42
8KAJ|1|J|G|43
8KAJ|1|J|U|44
8KAJ|1|J|U|45

Current chains

Chain E

RNA (34-MER)

Chain J

RNA (65-MER)

Nearby chains

Chain F

CRISPR-associated endonuclease Cas9/Csn1