IL_8OEQ_009

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UG*UGUGUA

Length

8 nucleotides

Bulged bases

8OEQ|1|1|U|250, 8OEQ|1|1|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_009 not in the Motif Atlas

Homologous match to IL_8C3A_010

Geometric discrepancy: 0.106

The information below is about IL_8C3A_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_33817.1

Basepair signature

cWW-R-L-L-L

Number of instances in this motif group

1

Unit IDs

8OEQ|1|1|U|168
8OEQ|1|1|G|169
*
8OEQ|1|1|U|248
8OEQ|1|1|G|249
8OEQ|1|1|U|250
8OEQ|1|1|G|251
8OEQ|1|1|U|252
8OEQ|1|1|A|253

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AI

Ribosomal protein L29

Chain t

60S ribosomal protein L13