IL_8OEQ_026

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AU*AUU

Length

5 nucleotides

Bulged bases

8OEQ|1|1|U|772

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_026 not in the Motif Atlas

Homologous match to IL_8C3A_027

Geometric discrepancy: 0.0396

The information below is about IL_8C3A_027

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8OEQ|1|1|A|751
8OEQ|1|1|U|752
*
8OEQ|1|1|A|771
8OEQ|1|1|U|772
8OEQ|1|1|U|773

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AC

60S ribosomal protein L29

Chain y

60S ribosomal protein L18-A