IL_8OEQ_057

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

8OEQ|1|1|G|1232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_057 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.095

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8OEQ|1|1|G|1230
8OEQ|1|1|U|1231
8OEQ|1|1|G|1232
8OEQ|1|1|G|1233
8OEQ|1|1|C|1234
*
8OEQ|1|1|G|1246
8OEQ|1|1|A|1247
8OEQ|1|1|A|1248
8OEQ|1|1|U|1249
8OEQ|1|1|C|1250

Current chains

Chain 1

25S ribosomal RNA

Nearby chains