IL_8OEQ_069

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

8OEQ|1|1|U|1816, 8OEQ|1|1|U|1817

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_069 not in the Motif Atlas

Homologous match to IL_8C3A_483

Geometric discrepancy: 0.0613

The information below is about IL_8C3A_483

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25360.1

Basepair signature

cWW-cWW

Number of instances in this motif group

10

Unit IDs

8OEQ|1|1|G|1619
8OEQ|1|1|G|1620
*
8OEQ|1|1|U|1815
8OEQ|1|1|U|1816
8OEQ|1|1|U|1817
8OEQ|1|1|C|1818

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein L34-B

Chain AL

60S ribosomal protein L38