IL_8OEQ_081
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGAAGUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_081 not in the Motif Atlas
- Geometric match to IL_8C3A_484
- Geometric discrepancy: 0.0534
- The information below is about IL_8C3A_484
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.2
- Basepair signature
- cWW-cWW-L-cWW-L-R-L-R-L-L
- Number of instances in this motif group
- 3
Unit IDs
8OEQ|1|1|G|1894
8OEQ|1|1|G|1895
8OEQ|1|1|A|1896
8OEQ|1|1|A|1897
8OEQ|1|1|G|1898
8OEQ|1|1|U|1899
8OEQ|1|1|C|1900
8OEQ|1|1|G|1901
8OEQ|1|1|G|1902
*
8OEQ|1|1|C|2311
8OEQ|1|1|U|2312
8OEQ|1|1|G|2313
8OEQ|1|1|U|2314
8OEQ|1|1|C|2315
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 6
- 60S ribosomal protein L23-A
- Chain k
- 60S ribosomal protein L3
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