IL_8OEQ_085

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GG*CAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_085 not in the Motif Atlas

Homologous match to IL_8C3A_086

Geometric discrepancy: 0.0828

The information below is about IL_8C3A_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74125.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8OEQ|1|1|G|1943
8OEQ|1|1|G|1944
*
8OEQ|1|1|C|2076
8OEQ|1|1|A|2077
8OEQ|1|1|A|2078
8OEQ|1|1|C|2079

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain z

60S ribosomal protein L19-A