IL_8OEQ_103
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGUGUAGAAUAAGUGGGAG*CGCCGGUGAAAUACCACUACC
- Length
- 40 nucleotides
- Bulged bases
- 8OEQ|1|1|U|2431, 8OEQ|1|1|U|2438, 8OEQ|1|1|G|2459, 8OEQ|1|1|U|2465, 8OEQ|1|1|C|2468
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8OEQ|1|1|G|2429
8OEQ|1|1|G|2430
8OEQ|1|1|U|2431
8OEQ|1|1|G|2432
8OEQ|1|1|U|2433
8OEQ|1|1|A|2434
8OEQ|1|1|G|2435
8OEQ|1|1|A|2436
8OEQ|1|1|A|2437
8OEQ|1|1|U|2438
8OEQ|1|1|A|2439
8OEQ|1|1|A|2440
8OEQ|1|1|G|2441
8OEQ|1|1|U|2442
8OEQ|1|1|G|2443
8OEQ|1|1|G|2444
8OEQ|1|1|G|2445
8OEQ|1|1|A|2446
8OEQ|1|1|G|2447
*
8OEQ|1|1|C|2454
8OEQ|1|1|G|2455
8OEQ|1|1|C|2456
8OEQ|1|1|C|2457
8OEQ|1|1|G|2458
8OEQ|1|1|G|2459
8OEQ|1|1|U|2460
8OEQ|1|1|G|2461
8OEQ|1|1|A|2462
8OEQ|1|1|A|2463
8OEQ|1|1|A|2464
8OEQ|1|1|U|2465
8OEQ|1|1|A|2466
8OEQ|1|1|C|2467
8OEQ|1|1|C|2468
8OEQ|1|1|A|2469
8OEQ|1|1|C|2470
8OEQ|1|1|U|2471
8OEQ|1|1|A|2472
8OEQ|1|1|C|2473
8OEQ|1|1|C|2474
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain AJ
- 60S ribosomal protein L36
- Chain l1
- Ribosomal protein
Coloring options: