IL_8OEQ_157
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CUG*CCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_157 not in the Motif Atlas
- Homologous match to IL_8C3A_008
- Geometric discrepancy: 0.0871
- The information below is about IL_8C3A_008
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
8OEQ|1|AS|C|124
8OEQ|1|AS|U|125
8OEQ|1|AS|G|126
*
8OEQ|1|AS|C|140
8OEQ|1|AS|C|141
8OEQ|1|AS|G|142
Current chains
- Chain AS
- 25S ribosomal RNA
Nearby chains
- Chain AU
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BC
- 60S ribosomal protein L8
- Chain BI
- 60S ribosomal protein L15-A
- Chain BS
- 60S ribosomal protein L25
- Chain CC
- Ribosomal protein L29
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