IL_8OEQ_163

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAC*GU

Length

5 nucleotides

Bulged bases

8OEQ|1|AS|A|338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_163 not in the Motif Atlas

Homologous match to IL_8C3A_014

Geometric discrepancy: 0.0603

The information below is about IL_8C3A_014

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8OEQ|1|AS|G|337
8OEQ|1|AS|A|338
8OEQ|1|AS|C|339
*
8OEQ|1|AU|G|25
8OEQ|1|AU|U|26

Current chains

Chain AS

25S ribosomal RNA

Chain AU

5.8S ribosomal RNA

Nearby chains

Chain AY

60S ribosomal protein L4-B

Chain BT

Ribosomal protein L24