IL_8OEQ_166

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUG*CG

Length

6 nucleotides

Bulged bases

8OEQ|1|AS|U|441

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_166 not in the Motif Atlas

Homologous match to IL_8C3A_017

Geometric discrepancy: 0.3445

The information below is about IL_8C3A_017

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

8OEQ|1|AS|C|439
8OEQ|1|AS|U|440
8OEQ|1|AS|U|441
8OEQ|1|AS|G|442
*
8OEQ|1|AS|C|487
8OEQ|1|AS|G|488

Current chains

Chain AS

25S ribosomal RNA

Nearby chains

Chain BA

60S ribosomal protein L6

Chain BZ

60S ribosomal protein L32