IL_8OEQ_167

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

8OEQ|1|AS|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_167 not in the Motif Atlas

Homologous match to IL_8C3A_019

Geometric discrepancy: 0.075

The information below is about IL_8C3A_019

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8OEQ|1|AS|G|505
8OEQ|1|AS|A|506
8OEQ|1|AS|G|507
*
8OEQ|1|AS|C|578
8OEQ|1|AS|C|579

Current chains

Chain AS

25S ribosomal RNA

Nearby chains

Chain AY

60S ribosomal protein L4-B

Chain BH

60S ribosomal protein L14-B

Chain CA

60S ribosomal protein L33-A