IL_8OEQ_169
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGAUAAUGGC*GACGAUAC
- Length
- 18 nucleotides
- Bulged bases
- 8OEQ|1|AS|A|515, 8OEQ|1|AS|U|516
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_169 not in the Motif Atlas
- Homologous match to IL_8C3A_021
- Geometric discrepancy: 0.0664
- The information below is about IL_8C3A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_18200.1
- Basepair signature
- cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8OEQ|1|AS|G|513
8OEQ|1|AS|G|514
8OEQ|1|AS|A|515
8OEQ|1|AS|U|516
8OEQ|1|AS|A|517
8OEQ|1|AS|A|518
8OEQ|1|AS|U|519
8OEQ|1|AS|G|520
8OEQ|1|AS|G|521
8OEQ|1|AS|C|522
*
8OEQ|1|AS|G|564
8OEQ|1|AS|A|565
8OEQ|1|AS|C|566
8OEQ|1|AS|G|567
8OEQ|1|AS|A|568
8OEQ|1|AS|U|569
8OEQ|1|AS|A|570
8OEQ|1|AS|C|571
Current chains
- Chain AS
- 25S ribosomal RNA
Nearby chains
- Chain AY
- 60S ribosomal protein L4-B
- Chain BB
- 60S ribosomal protein L7-A
- Chain BH
- 60S ribosomal protein L14-B
- Chain BN
- 60S ribosomal protein L20
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