IL_8OEQ_172
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GUUUG*CGUAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_172 not in the Motif Atlas
- Homologous match to IL_8C3A_024
- Geometric discrepancy: 0.0854
- The information below is about IL_8C3A_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74284.1
- Basepair signature
- cWW-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
8OEQ|1|AS|G|678
8OEQ|1|AS|U|679
8OEQ|1|AS|U|680
8OEQ|1|AS|U|681
8OEQ|1|AS|G|682
*
8OEQ|1|AS|C|694
8OEQ|1|AS|G|695
8OEQ|1|AS|U|696
8OEQ|1|AS|A|697
8OEQ|1|AS|C|698
Current chains
- Chain AS
- 25S ribosomal RNA
Nearby chains
- Chain AY
- 60S ribosomal protein L4-B
- Chain BG
- 60S ribosomal protein L13
- Chain BI
- 60S ribosomal protein L15-A
- Chain BV
- 60S ribosomal protein L28
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