IL_8OEQ_176

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_176 not in the Motif Atlas

Homologous match to IL_8C3A_028

Geometric discrepancy: 0.0514

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8OEQ|1|AS|C|754
8OEQ|1|AS|U|755
8OEQ|1|AS|G|756
8OEQ|1|AS|A|757
8OEQ|1|AS|U|758
8OEQ|1|AS|G|759
*
8OEQ|1|AS|C|764
8OEQ|1|AS|G|765
8OEQ|1|AS|G|766
8OEQ|1|AS|A|767
8OEQ|1|AS|U|768
8OEQ|1|AS|G|769

Current chains

Chain AS

25S ribosomal RNA

Nearby chains

Chain BG

60S ribosomal protein L13

Chain BV

60S ribosomal protein L28

Chain CJ

60S ribosomal protein L42-B