IL_8OEQ_182

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUU*AUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_182 not in the Motif Atlas

Homologous match to IL_8P9A_259

Geometric discrepancy: 0.0578

The information below is about IL_8P9A_259

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

8OEQ|1|AS|G|865
8OEQ|1|AS|G|866
8OEQ|1|AS|U|867
8OEQ|1|AS|U|868
*
8OEQ|1|AS|A|884
8OEQ|1|AS|U|885
8OEQ|1|AS|C|886

Current chains

Chain AS

25S ribosomal RNA

Nearby chains

Chain CE

60S ribosomal protein L37-B