IL_8OEQ_187

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUAUC*GAAG

Length

10 nucleotides

Bulged bases

8OEQ|1|AS|A|1099

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_187 not in the Motif Atlas

Homologous match to IL_8C3A_039

Geometric discrepancy: 0.1609

The information below is about IL_8C3A_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_59027.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

8OEQ|1|AS|C|973
8OEQ|1|AS|G|974
8OEQ|1|AS|U|975
8OEQ|1|AS|A|976
8OEQ|1|AS|U|977
8OEQ|1|AS|C|978
*
8OEQ|1|AS|G|1097
8OEQ|1|AS|A|1098
8OEQ|1|AS|A|1099
8OEQ|1|AS|G|1100

Current chains

Chain AS

25S ribosomal RNA

Nearby chains

Chain BB

60S ribosomal protein L7-A

Chain BL

60S ribosomal protein L18-A

Chain BW

60S ribosomal protein L29