IL_8OEQ_220

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_220 not in the Motif Atlas

Homologous match to IL_8C3A_074

Geometric discrepancy: 0.0601

The information below is about IL_8C3A_074

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8OEQ|1|AS|G|1657
8OEQ|1|AS|G|1658
8OEQ|1|AS|C|1659
*
8OEQ|1|AS|G|1782
8OEQ|1|AS|A|1783
8OEQ|1|AS|C|1784

Current chains

Chain AS

25S ribosomal RNA

Nearby chains

Chain BM

60S ribosomal protein L19-A

Chain CB

60S ribosomal protein L34-B

Chain CK

60S ribosomal protein L43-A