IL_8OEQ_311

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_311 not in the Motif Atlas

Homologous match to IL_8C3A_404

Geometric discrepancy: 0.0595

The information below is about IL_8C3A_404

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.13

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8OEQ|1|B|C|184
8OEQ|1|B|G|185
8OEQ|1|B|A|186
8OEQ|1|B|C|187
*
8OEQ|1|B|G|194
8OEQ|1|B|A|195
8OEQ|1|B|A|196
8OEQ|1|B|G|197

Current chains

Chain B

18S ribosomal RNA

Nearby chains

Chain K

40S ribosomal protein S8