IL_8OEQ_323

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCAAU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_323 not in the Motif Atlas

Homologous match to IL_8P9A_397

Geometric discrepancy: 0.0669

The information below is about IL_8P9A_397

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_26900.1

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

8OEQ|1|B|C|441
8OEQ|1|B|C|442
8OEQ|1|B|A|443
8OEQ|1|B|A|444
8OEQ|1|B|U|445
*
8OEQ|1|B|A|458
8OEQ|1|B|G|459

Current chains

Chain B

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain L

Ribosomal protein S4

Chain a

40S ribosomal protein S24