IL_8OEQ_335
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GAAAAAAUU*AUAUUAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_335 not in the Motif Atlas
- Homologous match to IL_8C3A_503
- Geometric discrepancy: 0.0745
- The information below is about IL_8C3A_503
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44416.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8OEQ|1|B|G|736
8OEQ|1|B|A|737
8OEQ|1|B|A|738
8OEQ|1|B|A|739
8OEQ|1|B|A|740
8OEQ|1|B|A|741
8OEQ|1|B|A|742
8OEQ|1|B|U|743
8OEQ|1|B|U|744
*
8OEQ|1|B|A|775
8OEQ|1|B|U|776
8OEQ|1|B|A|777
8OEQ|1|B|U|778
8OEQ|1|B|U|779
8OEQ|1|B|A|780
8OEQ|1|B|G|781
8OEQ|1|B|C|782
Current chains
- Chain B
- 18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S4
- Chain L
- Ribosomal protein S4
- Chain N
- 40S ribosomal protein S11A
- Chain Y
- 40S ribosomal protein S22-A
Coloring options: