IL_8OEQ_343
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_343 not in the Motif Atlas
- Homologous match to IL_8C3A_442
- Geometric discrepancy: 0.0537
- The information below is about IL_8C3A_442
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.5
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8OEQ|1|B|C|975
8OEQ|1|B|G|976
8OEQ|1|B|A|977
8OEQ|1|B|A|978
8OEQ|1|B|G|979
*
8OEQ|1|B|C|995
8OEQ|1|B|G|996
8OEQ|1|B|U|997
8OEQ|1|B|A|998
8OEQ|1|B|G|999
Current chains
- Chain B
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Q
- 40S ribosomal protein S14-A
- Chain c
- 40S ribosomal protein S26
- Chain j
- 60S ribosomal protein L2-B
Coloring options: