IL_8OEQ_346

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUGU*ACG

Length

7 nucleotides

Bulged bases

8OEQ|1|B|G|1038

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_346 not in the Motif Atlas

Homologous match to IL_8C3A_504

Geometric discrepancy: 0.1542

The information below is about IL_8C3A_504

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_26569.1

Basepair signature

cWW-R-cHW-L

Number of instances in this motif group

1

Unit IDs

8OEQ|1|B|U|1036
8OEQ|1|B|U|1037
8OEQ|1|B|G|1038
8OEQ|1|B|U|1039
*
8OEQ|1|B|A|1050
8OEQ|1|B|C|1051
8OEQ|1|B|G|1052

Current chains

Chain B

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S0

Chain D

40S ribosomal protein S1

Chain T

40S ribosomal protein S17-B