IL_8OEQ_349

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGA*UU

Length

5 nucleotides

Bulged bases

8OEQ|1|B|G|1135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_349 not in the Motif Atlas

Homologous match to IL_8P9A_430

Geometric discrepancy: 0.108

The information below is about IL_8P9A_430

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

8OEQ|1|B|G|1134
8OEQ|1|B|G|1135
8OEQ|1|B|A|1136
*
8OEQ|1|B|U|1614
8OEQ|1|B|U|1615

Current chains

Chain B

18S ribosomal RNA

Nearby chains

Chain c

40S ribosomal protein S26