IL_8OEQ_360
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CG*CAG
- Length
- 5 nucleotides
- Bulged bases
- 8OEQ|1|B|A|1413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_360 not in the Motif Atlas
- Homologous match to IL_8C3A_458
- Geometric discrepancy: 0.0739
- The information below is about IL_8C3A_458
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 112
Unit IDs
8OEQ|1|B|C|1265
8OEQ|1|B|G|1266
*
8OEQ|1|B|C|1412
8OEQ|1|B|A|1413
8OEQ|1|B|G|1414
Current chains
- Chain B
- 18S ribosomal RNA
Nearby chains
- Chain E
- Ribosomal protein S5
- Chain F
- Ribosomal protein S3
- Chain S
- 40S ribosomal protein S16
- Chain W
- Ribosomal protein S10
- Chain f
- 40S ribosomal protein S29A
- Chain i
- 60S ribosomal protein CAALFM_C304810CA
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