IL_8OEQ_385

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

8OEQ|1|CM|U|45, 8OEQ|1|CM|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_385 not in the Motif Atlas

Geometric match to IL_8C3A_395

Geometric discrepancy: 0.056

The information below is about IL_8C3A_395

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80458.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8OEQ|1|CM|G|42
8OEQ|1|CM|A|43
8OEQ|1|CM|U|44
8OEQ|1|CM|U|45
8OEQ|1|CM|A|46
8OEQ|1|CM|A|47
8OEQ|1|CM|G|48
*
8OEQ|1|CM|C|429
8OEQ|1|CM|G|430
8OEQ|1|CM|C|431

Current chains

Chain CM

18S ribosomal RNA

Nearby chains

Chain DK

Ribosomal protein S23 (S12)