IL_8OEQ_388

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UAUAAG*UGAAA

Length

11 nucleotides

Bulged bases

8OEQ|1|CM|U|66, 8OEQ|1|CM|A|68

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_388 not in the Motif Atlas

Homologous match to IL_8C3A_398

Geometric discrepancy: 0.107

The information below is about IL_8C3A_398

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34063.1

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8OEQ|1|CM|U|64
8OEQ|1|CM|A|65
8OEQ|1|CM|U|66
8OEQ|1|CM|A|67
8OEQ|1|CM|A|68
8OEQ|1|CM|G|69
*
8OEQ|1|CM|U|82
8OEQ|1|CM|G|83
8OEQ|1|CM|A|84
8OEQ|1|CM|A|85
8OEQ|1|CM|A|86

Current chains

Chain CM

18S ribosomal RNA

Nearby chains

Chain BR

60S ribosomal protein L24-A

Chain CT

40S ribosomal protein S6

Chain DL

40S ribosomal protein S24