IL_8OEQ_402
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGG*CGAUUC
- Length
- 9 nucleotides
- Bulged bases
- 8OEQ|1|CM|U|378
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_402 not in the Motif Atlas
- Homologous match to IL_8C3A_412
- Geometric discrepancy: 0.05
- The information below is about IL_8C3A_412
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49054.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8OEQ|1|CM|G|361
8OEQ|1|CM|G|362
8OEQ|1|CM|G|363
*
8OEQ|1|CM|C|374
8OEQ|1|CM|G|375
8OEQ|1|CM|A|376
8OEQ|1|CM|U|377
8OEQ|1|CM|U|378
8OEQ|1|CM|C|379
Current chains
- Chain CM
- 18S ribosomal RNA
Nearby chains
- Chain CR
- 40S ribosomal protein S4
- Chain CW
- Ribosomal protein S4
- Chain DK
- Ribosomal protein S23 (S12)
Coloring options: