IL_8OEQ_424
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 8OEQ|1|CM|G|898
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_424 not in the Motif Atlas
- Homologous match to IL_8C3A_440
- Geometric discrepancy: 0.0653
- The information below is about IL_8C3A_440
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_22252.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
8OEQ|1|CM|U|878
8OEQ|1|CM|U|879
8OEQ|1|CM|G|880
8OEQ|1|CM|U|881
8OEQ|1|CM|C|882
8OEQ|1|CM|A|883
8OEQ|1|CM|G|884
*
8OEQ|1|CM|C|895
8OEQ|1|CM|U|896
8OEQ|1|CM|U|897
8OEQ|1|CM|G|898
8OEQ|1|CM|G|899
8OEQ|1|CM|A|900
8OEQ|1|CM|U|901
8OEQ|1|CM|U|902
8OEQ|1|CM|U|903
8OEQ|1|CM|A|904
Current chains
- Chain CM
- 18S ribosomal RNA
Nearby chains
- Chain AS
- Large subunit ribosomal RNA; LSU rRNA
- Chain CO
- 40S ribosomal protein S1
- Chain DB
- 40S ribosomal protein S14-A
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