IL_8OEQ_441
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UGCAUGGC*GUCUGUGAUG
- Length
- 18 nucleotides
- Bulged bases
- 8OEQ|1|CM|C|1259, 8OEQ|1|CM|U|1418, 8OEQ|1|CM|G|1421
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_441 not in the Motif Atlas
- Geometric match to IL_8C3A_505
- Geometric discrepancy: 0.0462
- The information below is about IL_8C3A_505
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_06463.1
- Basepair signature
- cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
8OEQ|1|CM|U|1257
8OEQ|1|CM|G|1258
8OEQ|1|CM|C|1259
8OEQ|1|CM|A|1260
8OEQ|1|CM|U|1261
8OEQ|1|CM|G|1262
8OEQ|1|CM|G|1263
8OEQ|1|CM|C|1264
*
8OEQ|1|CM|G|1415
8OEQ|1|CM|U|1416
8OEQ|1|CM|C|1417
8OEQ|1|CM|U|1418
8OEQ|1|CM|G|1419
8OEQ|1|CM|U|1420
8OEQ|1|CM|G|1421
8OEQ|1|CM|A|1422
8OEQ|1|CM|U|1423
8OEQ|1|CM|G|1424
Current chains
- Chain CM
- 18S ribosomal RNA
Nearby chains
- Chain CL
- 60S ribosomal protein CAALFM_C304810CA
- Chain CQ
- Ribosomal protein S3
- Chain CX
- 40S ribosomal protein S10-A
- Chain DH
- Ribosomal protein S10
- Chain DQ
- 40S ribosomal protein S29A
- Chain DS
- Ubiquitin-40S ribosomal protein S31 fusion protein
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