IL_8OEQ_448
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GCU*AUAGUC
- Length
- 9 nucleotides
- Bulged bases
- 8OEQ|1|CM|U|1356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_448 not in the Motif Atlas
- Homologous match to IL_8C3A_463
- Geometric discrepancy: 0.0988
- The information below is about IL_8C3A_463
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_16253.1
- Basepair signature
- cWW-R-L-R-L-L-L
- Number of instances in this motif group
- 1
Unit IDs
8OEQ|1|CM|G|1336
8OEQ|1|CM|C|1337
8OEQ|1|CM|U|1338
*
8OEQ|1|CM|A|1355
8OEQ|1|CM|U|1356
8OEQ|1|CM|A|1357
8OEQ|1|CM|G|1358
8OEQ|1|CM|U|1359
8OEQ|1|CM|C|1360
Current chains
- Chain CM
- 18S ribosomal RNA
Nearby chains
- Chain DD
- 40S ribosomal protein S16
- Chain DG
- 40S ribosomal protein S19-A
- Chain DH
- Ribosomal protein S10
Coloring options: