IL_8OEQ_464

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UCUUG*UAA

Length

8 nucleotides

Bulged bases

8OEQ|1|1|C|1011, 8OEQ|1|1|U|1012, 8OEQ|1|1|U|1013

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_464 not in the Motif Atlas

Homologous match to IL_8CRE_477

Geometric discrepancy: 0.162

The information below is about IL_8CRE_477

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8OEQ|1|1|U|1010
8OEQ|1|1|C|1011
8OEQ|1|1|U|1012
8OEQ|1|1|U|1013
8OEQ|1|1|G|1014
*
8OEQ|1|1|U|1030
8OEQ|1|1|A|1031
8OEQ|1|1|A|1032

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain i

60S ribosomal protein CAALFM_C304810CA

Chain m

Uncharacterized protein CaJ7.0206

Chain r

60S ribosomal protein L10