IL_8OH6_005
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 8OH6|1|1|A|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OH6_005 not in the Motif Atlas
- Homologous match to IL_8P9A_234
- Geometric discrepancy: 0.0599
- The information below is about IL_8P9A_234
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- tSH-tHW-tHH-tHS
- Motif group
- IL_93502.1
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8OH6|1|1|C|30
8OH6|1|1|U|31
8OH6|1|1|G|32
8OH6|1|1|A|33
8OH6|1|1|A|34
8OH6|1|1|C|35
8OH6|1|1|U|36
8OH6|1|1|U|37
*
8OH6|1|1|A|44
8OH6|1|1|U|45
8OH6|1|1|C|46
8OH6|1|1|A|47
8OH6|1|1|A|48
8OH6|1|1|U|49
8OH6|1|1|A|50
8OH6|1|1|A|51
8OH6|1|1|G|52
Current chains
- Chain 1
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain AB
- 60S ribosomal protein L28
- Chain AK
- 60S ribosomal protein L37-B
- Chain AP
- 60S ribosomal protein L42-B
- Chain t
- 60S ribosomal protein L13
- Chain v
- 60S ribosomal protein L15-A
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