IL_8OH6_007
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- AU*AGUUGU
- Length
- 8 nucleotides
- Bulged bases
- 8OH6|1|1|U|146
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OH6_007 not in the Motif Atlas
- Homologous match to IL_8C3A_007
- Geometric discrepancy: 0.0417
- The information below is about IL_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_19724.3
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
8OH6|1|1|A|122
8OH6|1|1|U|123
*
8OH6|1|1|A|143
8OH6|1|1|G|144
8OH6|1|1|U|145
8OH6|1|1|U|146
8OH6|1|1|G|147
8OH6|1|1|U|148
Current chains
- Chain 1
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AI
- Ribosomal protein L29
- Chain p
- 60S ribosomal protein L8
- Chain v
- 60S ribosomal protein L15-A
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