IL_8OH6_010

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UG*UGUGUA

Length

8 nucleotides

Bulged bases

8OH6|1|1|U|250, 8OH6|1|1|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_010 not in the Motif Atlas

Homologous match to IL_8C3A_010

Geometric discrepancy: 0.0833

The information below is about IL_8C3A_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_33817.1

Basepair signature

cWW-R-L-L-L

Number of instances in this motif group

1

Unit IDs

8OH6|1|1|U|168
8OH6|1|1|G|169
*
8OH6|1|1|U|248
8OH6|1|1|G|249
8OH6|1|1|U|250
8OH6|1|1|G|251
8OH6|1|1|U|252
8OH6|1|1|A|253

Current chains

Chain 1

25S (gene name XR_002086444.1)

Nearby chains

Chain AI

Ribosomal protein L29

Chain t

60S ribosomal protein L13