IL_8OH6_016
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OH6_016 not in the Motif Atlas
- Homologous match to IL_8C3A_016
- Geometric discrepancy: 0.0386
- The information below is about IL_8C3A_016
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8OH6|1|1|G|404
8OH6|1|1|U|405
8OH6|1|1|G|406
8OH6|1|1|A|407
8OH6|1|1|A|408
8OH6|1|1|A|409
8OH6|1|1|U|410
*
8OH6|1|4|A|13
8OH6|1|4|C|14
8OH6|1|4|G|15
8OH6|1|4|G|16
8OH6|1|4|A|17
8OH6|1|4|U|18
8OH6|1|4|C|19
Current chains
- Chain 1
- 25S (gene name XR_002086444.1)
- Chain 4
- 5.8S
Nearby chains
- Chain AF
- 60S ribosomal protein L32
- Chain l
- 60S ribosomal protein L4-B
- Chain x
- Ribosomal protein L22
Coloring options: