IL_8OH6_025

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

8OH6|1|1|A|776

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_025 not in the Motif Atlas

Homologous match to IL_8C3A_026

Geometric discrepancy: 0.0547

The information below is about IL_8C3A_026

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8OH6|1|1|C|748
8OH6|1|1|C|749
*
8OH6|1|1|G|775
8OH6|1|1|A|776
8OH6|1|1|G|777

Current chains

Chain 1

25S (gene name XR_002086444.1)

Nearby chains

Chain AB

60S ribosomal protein L28

Chain y

60S ribosomal protein L18-A