IL_8OH6_041

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

AA*UUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_041 not in the Motif Atlas

Homologous match to IL_8C3A_042

Geometric discrepancy: 0.0418

The information below is about IL_8C3A_042

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

8OH6|1|1|A|993
8OH6|1|1|A|994
*
8OH6|1|1|U|1046
8OH6|1|1|U|1047
8OH6|1|1|U|1048

Current chains

Chain 1

25S (gene name XR_002086444.1)

Nearby chains

Chain 2

60S ribosomal protein L21-A

Chain 3

5S ribosomal RNA; 5S rRNA

Chain m

Uncharacterized protein CaJ7.0206

Chain r

60S ribosomal protein L10