IL_8OH6_055
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- GUG*CC
- Length
- 5 nucleotides
- Bulged bases
- 8OH6|1|1|U|1204
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OH6_055 not in the Motif Atlas
- Homologous match to IL_8C3A_056
- Geometric discrepancy: 0.0594
- The information below is about IL_8C3A_056
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
8OH6|1|1|G|1203
8OH6|1|1|U|1204
8OH6|1|1|G|1205
*
8OH6|1|1|C|1292
8OH6|1|1|C|1293
Current chains
- Chain 1
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain 0
- 60S ribosomal protein L20
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain AN
- 60S ribosomal protein L40-B
- Chain q
- 60S ribosomal protein L9-B
Coloring options: