IL_8OH6_058
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- GAGUG*CUC
- Length
- 8 nucleotides
- Bulged bases
- 8OH6|1|1|A|1259
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OH6_058 not in the Motif Atlas
- Homologous match to IL_8P9A_284
- Geometric discrepancy: 0.1735
- The information below is about IL_8P9A_284
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36931.1
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 23
Unit IDs
8OH6|1|1|G|1258
8OH6|1|1|A|1259
8OH6|1|1|G|1260
8OH6|1|1|U|1261
8OH6|1|1|G|1262
*
8OH6|1|1|C|1271
8OH6|1|1|U|1272
8OH6|1|1|C|1273
Current chains
- Chain 1
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain 12
- 60S ribosomal protein L12-A
- Chain AN
- 60S ribosomal protein L40-B
Coloring options: