IL_8OH6_084

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GCU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_084 not in the Motif Atlas

Homologous match to IL_8C3A_085

Geometric discrepancy: 0.035

The information below is about IL_8C3A_085

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8OH6|1|1|G|1936
8OH6|1|1|C|1937
8OH6|1|1|U|1938
*
8OH6|1|1|A|2084
8OH6|1|1|A|2085
8OH6|1|1|C|2086

Current chains

Chain 1

25S (gene name XR_002086444.1)

Nearby chains

Chain B

Small subunit ribosomal RNA; SSU rRNA

Chain K

40S ribosomal protein S8

Chain z

60S ribosomal protein L19-A