IL_8OH6_091

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

8OH6|1|1|A|2185

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_091 not in the Motif Atlas

Homologous match to IL_8C3A_092

Geometric discrepancy: 0.0681

The information below is about IL_8C3A_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58579.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8OH6|1|1|G|2184
8OH6|1|1|A|2185
8OH6|1|1|A|2186
8OH6|1|1|U|2187
8OH6|1|1|G|2188
*
8OH6|1|1|C|2213
8OH6|1|1|G|2214
8OH6|1|1|C|2215

Current chains

Chain 1

25S (gene name XR_002086444.1)

Nearby chains

Chain B

Small subunit ribosomal RNA; SSU rRNA