IL_8OH6_096

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

8OH6|1|1|A|2375, 8OH6|1|1|C|2955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_096 not in the Motif Atlas

Homologous match to IL_8C3A_097

Geometric discrepancy: 0.0591

The information below is about IL_8C3A_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8OH6|1|1|G|2374
8OH6|1|1|A|2375
8OH6|1|1|A|2376
*
8OH6|1|1|U|2953
8OH6|1|1|A|2954
8OH6|1|1|C|2955
8OH6|1|1|C|2956

Current chains

Chain 1

25S (gene name XR_002086444.1)

Nearby chains

Chain k

60S ribosomal protein L3

Chain x

Ribosomal protein L22