IL_8OH6_101

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GAG*UCU

Length

6 nucleotides

Bulged bases

8OH6|1|1|C|2476

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_101 not in the Motif Atlas

Homologous match to IL_8C3A_509

Geometric discrepancy: 0.5095

The information below is about IL_8C3A_509

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59096.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

8

Unit IDs

8OH6|1|1|G|2426
8OH6|1|1|A|2427
8OH6|1|1|G|2428
*
8OH6|1|1|U|2475
8OH6|1|1|C|2476
8OH6|1|1|U|2477

Current chains

Chain 1

25S (gene name XR_002086444.1)

Nearby chains