IL_8OH6_104
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- AUGAAGC*GGGU
- Length
- 11 nucleotides
- Bulged bases
- 8OH6|1|1|G|2500, 8OH6|1|1|G|2557, 8OH6|1|1|G|2558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OH6_104 not in the Motif Atlas
- Homologous match to IL_8C3A_106
- Geometric discrepancy: 0.0433
- The information below is about IL_8C3A_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
8OH6|1|1|A|2498
8OH6|1|1|U|2499
8OH6|1|1|G|2500
8OH6|1|1|A|2501
8OH6|1|1|A|2502
8OH6|1|1|G|2503
8OH6|1|1|C|2504
*
8OH6|1|1|G|2556
8OH6|1|1|G|2557
8OH6|1|1|G|2558
8OH6|1|1|U|2559
Current chains
- Chain 1
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 8
- 60S ribosomal protein L25
- Chain j
- 60S ribosomal protein L2-B
- Chain p
- 60S ribosomal protein L8
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