IL_8OH6_131

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CAACG*UUG

Length

8 nucleotides

Bulged bases

8OH6|1|1|U|3224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_131 not in the Motif Atlas

Homologous match to IL_8C3A_133

Geometric discrepancy: 0.0811

The information below is about IL_8C3A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60154.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

8OH6|1|1|C|3190
8OH6|1|1|A|3191
8OH6|1|1|A|3192
8OH6|1|1|C|3193
8OH6|1|1|G|3194
*
8OH6|1|1|U|3223
8OH6|1|1|U|3224
8OH6|1|1|G|3225

Current chains

Chain 1

25S (gene name XR_002086444.1)

Nearby chains

Chain n

60S ribosomal protein L6

Chain u

60S ribosomal protein L14-B

Chain w

Ribosomal protein L13