IL_8OH6_138

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

8OH6|1|1|U|3306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OH6_138 not in the Motif Atlas

Homologous match to IL_8P9A_361

Geometric discrepancy: 0.1671

The information below is about IL_8P9A_361

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8OH6|1|1|G|3305
8OH6|1|1|U|3306
8OH6|1|1|A|3307
*
8OH6|1|1|U|3328
8OH6|1|1|C|3329

Current chains

Chain 1

25S (gene name XR_002086444.1)

Nearby chains

Chain 7

60S ribosomal protein L24-A